Benos et al. (2002) J Mol Biol
Data downloads
   
 

  This directory contains data from the paper: P.V. Benos, A.S. Lapedes, and G.D. Stormo "Probabilistic code for DNA recognition by proteins of the EGR family",     J Mol Biol (2002) 323: 701-727.

  The data included here are the EGR selection dataset (SAMIE training set) and the resulting model for the C2H2 zinc finger protein family.
A copy of the paper can be found here

  • EGR selection dataset (SAMIE training set)
    This dataset contains the results of the SELEX and phage display experiments, collected from the literature, that were used to train SAMIE.
  • EGR model
    This is the resulting SAMIE model for the C2H2 zinc finger protein family.
   
   
   
 
 
   
 
   
 
   
   
   

 
University of Pittsburgh Department of Computational Biology