ComiR (Combinatorial miRNA targeting) predicts whether a given mRNA is targeted by a set of miRNAs. ComiR uses miRNA expression to improve and combine multiple miRNA targets for each of the four prediction algorithms: miRanda, PITA, TargetScan and mirSVR. The composite scores of the four algorithms are then combined using a support vector machine trained on Drosophila Ago1 IP data.
Last update: 21/07/2014
Supported species: H. sapiens, M. musculus, D. melanogaster , C. elegans.
Comments/suggestions: clc196 [at] pitt [dot] edu
Download specific species files here:
H.sapiens (380G; tar.gz:15G)
M.musculus (68G; tar.gz:9.3G)
D.melanogaster (3G; tar.gz:520M)
C.elegans (1.3G; tar.gz:275M)
If you find ComiR useful please cite:
Supported by the National Library of Midicine - NIH
Go to the Benos Laboratory web page
Go to the Department of Computational Biology main web page
Go to the University of Pittsburgh main web page