matrix or alignment input	(select example) alignment matrix TRANSFAC matrix (1) TRANSFAC matrix (2) TRANSFAC matrix (3) energies (1) energies (2) DNA alignment RNA alignment protein alignment DNA FastA protein FastA	C2H2 enoLOGOS form
no input parameters set
enoLOGOS parameters		(select defaults) DNA defaults RNA defaults prot. defaults
weight type unknown energies alignment counts probabilities (Ka's) arbitrary energy units none none kT kcal/mol kJ/mol J/mol logo title logo plot method relative entropy relative entropy frequency weights as entered x-axis label scale letters by prob. ON ON OFF wts as is negate as is y-axis label log base 2 2 e 10 y-axis max mutual info OFF ON OFF reverse-comp OFF ON OFF x-axis,y-axis ON ON OFF ON ON OFF column aspect ratio letters red green blue %GC (select %GC) user defined equiprobable E.coli S.cerevisiae C.elegans D.melanogaster M.musculus H.sapiens
Supported by the National Science Foundation		Reference   UCSD mirror