******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 3.5.3 (Release date: 2006-04-30 01:41:24 -0700 (Sun, 30 Apr 2006)) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= pasted_sequences ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ YBR018C 1.0000 500 YBR019C 1.0000 500 YBR020W 1.0000 600 YLR081W 1.0000 500 YML051W 1.0000 500 YOR120W 1.0000 500 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /home/meme/meme353/LOGS/meme.23882.data -dna -mod zoops -nmotifs 3 -maxsites 6 -minw 6 -maxw 50 -evt 1e100 -revcomp -time 7200 -maxsize 60000 -nostatus -maxiter 20 model: mod= zoops nmotifs= 3 evt= 1e+100 object function= E-value of product of p-values width: minw= 6 maxw= 50 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 6 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 20 distance= 1e-05 data: n= 3100 N= 6 strands: + - sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.303 C 0.197 G 0.197 T 0.303 Background letter frequencies (from dataset with add-one prior applied): A 0.303 C 0.197 G 0.197 T 0.303 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 29 sites = 6 llr = 157 E-value = 3.7e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :3::::72:5::::::2:::53::22:3: pos.-specific C 825a::3:3:8:3:7278a:3:7:255:7 probability G :3::aa:8532:5:28:2:a:22a5:55: matrix T 225:::::22:a2a2:2:::252:23:23 bits 2.3 *** ** * 2.1 *** ** * 1.9 *** ** * 1.6 * *** * ** * * *** * Information 1.4 * *** * ** * * *** * * content 1.2 * *** * ** * * *** * * * (37.7 bits) 0.9 * ****** ** ******* ** * * 0.7 * ******* ********** ** * * 0.5 * ********************** **** 0.2 * *************************** 0.0 ----------------------------- Multilevel CACCGGAGGACTGTCGCCCGATCGGCCGC consensus GT C CG C CA TGAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- YBR020W - 158 1.93e-18 GAGAGTCTTC CGTCGGAGGGCTGTCGCCCGCTCGGCGGC TTCTAATCCG YBR019C + 247 1.93e-18 GAGAGTCTTC CGTCGGAGGGCTGTCGCCCGCTCGGCGGC TTCTAATCCG YML051W + 326 4.45e-13 TTTCTTCATT TACCGGCGCACTCTCGCCCGAACGACCTC AAAATGTCTG YLR081W + 82 9.38e-12 CTCAGGAAGG CACCGGCGGTCTTTCGTCCGTGCGGAGAT ATCTGCGCCG YBR018C + 219 4.02e-11 GAAAGCTATA CTTCGGAGCACTGTTGAGCGAAGGCTCAT TAGATATATT YOR120W - 123 5.66e-11 CCTTGTTCTT CCCCGGAATAGTCTGCCCCGATTGTTCGC CGGTGTTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YBR020W 1.9e-18 157_[-1]_414 YBR019C 1.9e-18 246_[+1]_225 YML051W 4.4e-13 325_[+1]_146 YLR081W 9.4e-12 81_[+1]_390 YBR018C 4e-11 218_[+1]_253 YOR120W 5.7e-11 122_[-1]_349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=29 seqs=6 YBR020W ( 158) CGTCGGAGGGCTGTCGCCCGCTCGGCGGC 1 YBR019C ( 247) CGTCGGAGGGCTGTCGCCCGCTCGGCGGC 1 YML051W ( 326) TACCGGCGCACTCTCGCCCGAACGACCTC 1 YLR081W ( 82) CACCGGCGGTCTTTCGTCCGTGCGGAGAT 1 YBR018C ( 219) CTTCGGAGCACTGTTGAGCGAAGGCTCAT 1 YOR120W ( 123) CCCCGGAATAGTCTGCCCCGATTGTTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 2932 bayes= 9.378 E= 3.7e-008 -923 208 -923 -86 14 -24 76 -86 -923 134 -923 72 -923 234 -923 -923 -923 -923 234 -923 -923 -923 234 -923 114 76 -923 -923 -86 -923 208 -923 -923 76 134 -86 72 -923 76 -86 -923 208 -24 -923 -923 -923 -923 172 -923 76 134 -86 -923 -923 -923 172 -923 176 -24 -86 -923 -24 208 -923 -86 176 -923 -86 -923 208 -24 -923 -923 234 -923 -923 -923 -923 234 -923 72 76 -923 -86 14 -923 -24 72 -923 176 -24 -86 -923 -923 234 -923 -86 -24 134 -86 -86 134 -923 14 -923 134 134 -923 14 -923 134 -86 -923 176 -923 14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 6 E= 3.7e-008 0.000000 0.833333 0.000000 0.166667 0.333333 0.166667 0.333333 0.166667 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.333333 0.500000 0.166667 0.500000 0.000000 0.333333 0.166667 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.500000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.166667 0.166667 0.000000 0.166667 0.833333 0.000000 0.166667 0.666667 0.000000 0.166667 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.333333 0.000000 0.166667 0.333333 0.000000 0.166667 0.500000 0.000000 0.666667 0.166667 0.166667 0.000000 0.000000 1.000000 0.000000 0.166667 0.166667 0.500000 0.166667 0.166667 0.500000 0.000000 0.333333 0.000000 0.500000 0.500000 0.000000 0.333333 0.000000 0.500000 0.166667 0.000000 0.666667 0.000000 0.333333 -------------------------------------------------------------------------------- Time 1.99 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 48 sites = 3 llr = 162 E-value = 7.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A :::a::73:::::::::a:3:7:7::::::::::a3:a7::::733:: pos.-specific C a::::7:::3a:3a3a::::a:7337:37:33:7:::::a:73377:: probability G :aa:a:37:7:a7:7:a:77::3::::7:a:::::77:::a:7:::aa matrix T :::::3::a:::::::::3::3::73a:3:77a3::3:3::3:::::: bits 2.3 *** * ** * ** * * ** ** 2.1 *** * ** * ** * * ** ** 1.9 *** * ** * ** * * ** ** 1.6 ***** * ** * *** * * * * * * ** ** Information 1.4 ***** ********** * * ** * * * * ** * ** content 1.2 ****** ************** * ***** ****** **** **** (78.1 bits) 0.9 ********************* **************** ********* 0.7 ************************************************ 0.5 ************************************************ 0.2 ************************************************ 0.0 ------------------------------------------------ Multilevel CGGAGCAGTGCGGCGCGAGGCACATCTGCGTTTCAGGAACGCGACCGG consensus TGA C C C TA TGCCT CT CC T AT T TCCAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------ YBR020W - 218 8.69e-32 CTTTATTGTT CGGAGCAGTGCGGCGCGAGGCACATCTGCGTTTCAGGAACGCGACCGG TGAAGACGAG YBR019C + 168 8.69e-32 CTTTATTGTT CGGAGCAGTGCGGCGCGAGGCACATCTGCGTTTCAGGAACGCGACCGG TGAAGACGAG YLR081W - 137 4.90e-21 AATCTCGGTT CGGAGTGATCCGCCCCGATACTGCCTTCTGCCTTAATATCGTCCAAGG CACATGGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YBR020W 8.7e-32 217_[-2]_335 YBR019C 8.7e-32 167_[+2]_285 YLR081W 4.9e-21 136_[-2]_316 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=48 seqs=3 YBR020W ( 218) CGGAGCAGTGCGGCGCGAGGCACATCTGCGTTTCAGGAACGCGACCGG 1 YBR019C ( 168) CGGAGCAGTGCGGCGCGAGGCACATCTGCGTTTCAGGAACGCGACCGG 1 YLR081W ( 137) CGGAGTGATCCGCCCCGATACTGCCTTCTGCCTTAATATCGTCCAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 48 n= 2818 bayes= 10.3218 E= 7.5e-003 -823 234 -823 -823 -823 -823 234 -823 -823 -823 234 -823 172 -823 -823 -823 -823 -823 234 -823 -823 176 -823 14 114 -823 76 -823 14 -823 176 -823 -823 -823 -823 172 -823 76 176 -823 -823 234 -823 -823 -823 -823 234 -823 -823 76 176 -823 -823 234 -823 -823 -823 76 176 -823 -823 234 -823 -823 -823 -823 234 -823 172 -823 -823 -823 -823 -823 176 14 14 -823 176 -823 -823 234 -823 -823 114 -823 -823 14 -823 176 76 -823 114 76 -823 -823 -823 76 -823 114 -823 176 -823 14 -823 -823 -823 172 -823 76 176 -823 -823 176 -823 14 -823 -823 234 -823 -823 76 -823 114 -823 76 -823 114 -823 -823 -823 172 -823 176 -823 14 172 -823 -823 -823 14 -823 176 -823 -823 -823 176 14 172 -823 -823 -823 114 -823 -823 14 -823 234 -823 -823 -823 -823 234 -823 -823 176 -823 14 -823 76 176 -823 114 76 -823 -823 14 176 -823 -823 14 176 -823 -823 -823 -823 234 -823 -823 -823 234 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 48 nsites= 3 E= 7.5e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.666667 0.000000 0.333333 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.666667 0.333333 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 0.666667 0.333333 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.333333 0.666667 0.000000 0.666667 0.333333 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- Time 3.83 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 50 sites = 4 llr = 177 E-value = 2.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 3a5:5::a558a3::::a::883:::::::38:aaa:3:538883:5a:3 pos.-specific C :::::::::5::::::a:::::58:335885:8:::55::53::::5:8: probability G 8::a3a8:5::::388::8:::3::5833::33:::5::::::3:5::38 matrix T ::5:3:3:::3:8833::3a33:3a3:3:33::::::3a53:3:85:::: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * * * * ** * * * * **** * ** Information 1.4 ** * *** * ****** ** * ** ***** * *** content 1.2 ** * *** * ******* ** * ** ****** * * * *** (63.8 bits) 0.9 ** * ***************** ** * ** ****** * ********* 0.7 **** ************************* ****** ** ********* 0.5 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel GAAGAGGAAAAATTGGCAGTAACCTGGCCCCACAAACCTACAAATGAACG consensus A T G T GCT AGTT T TTAT CCGGTAGG GA TACTGATC GA sequence T G T T T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- YBR020W + 304 1.15e-27 TTATGGTTAT GAAGAGGAAAAATTGGCAGTAACCTGGCCCCACAAACCTTCAAATTAACG AATCAAATTA YBR019C - 80 1.15e-27 TTATGGTTAT GAAGAGGAAAAATTGGCAGTAACCTGGCCCCACAAACCTTCAAATTAACG AATCAAATTA YLR081W + 217 1.79e-18 CCCATCTCAA GATGGGGAGCAAATGGCATTATACTCCTGCTAGAAAGTTAACTGTGCACA TATTCTTAAA YBR018C + 377 2.11e-17 AGCTGAAAAT AATGTGTAGCTATGTTCAGTTAGTTTGGCTAGCAAAGATATAAAAGCAGG TCGGAAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YBR020W 1.1e-27 303_[+3]_247 YBR019C 1.1e-27 79_[-3]_371 YLR081W 1.8e-18 216_[+3]_234 YBR018C 2.1e-17 376_[+3]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=50 seqs=4 YBR020W ( 304) GAAGAGGAAAAATTGGCAGTAACCTGGCCCCACAAACCTTCAAATTAACG 1 YBR019C ( 80) GAAGAGGAAAAATTGGCAGTAACCTGGCCCCACAAACCTTCAAATTAACG 1 YLR081W ( 217) GATGGGGAGCAAATGGCATTATACTCCTGCTAGAAAGTTAACTGTGCACA 1 YBR018C ( 377) AATGTGTAGCTATGTTCAGTTAGTTTGGCTAGCAAAGATATAAAAGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 2806 bayes= 9.45224 E= 2.7e-001 -28 -865 193 -865 172 -865 -865 -865 72 -865 -865 72 -865 -865 234 -865 72 -865 34 -28 -865 -865 234 -865 -865 -865 193 -28 172 -865 -865 -865 72 -865 134 -865 72 134 -865 -865 131 -865 -865 -28 172 -865 -865 -865 -28 -865 -865 131 -865 -865 34 131 -865 -865 193 -28 -865 -865 193 -28 -865 234 -865 -865 172 -865 -865 -865 -865 -865 193 -28 -865 -865 -865 172 131 -865 -865 -28 131 -865 -865 -28 -28 134 34 -865 -865 193 -865 -28 -865 -865 -865 172 -865 34 134 -28 -865 34 193 -865 -865 134 34 -28 -865 193 34 -865 -865 193 -865 -28 -28 134 -865 -28 131 -865 34 -865 -865 193 34 -865 172 -865 -865 -865 172 -865 -865 -865 172 -865 -865 -865 -865 134 134 -865 -28 134 -865 -28 -865 -865 -865 172 72 -865 -865 72 -28 134 -865 -28 131 34 -865 -865 131 -865 -865 -28 131 -865 34 -865 -28 -865 -865 131 -865 -865 134 72 72 134 -865 -865 172 -865 -865 -865 -865 193 34 -865 -28 -865 193 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 4 E= 2.7e-001 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.250000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.250000 0.500000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.500000 0.250000 0.000000 0.250000 0.750000 0.000000 0.000000 0.500000 0.250000 0.250000 0.000000 0.750000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 0.250000 0.500000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.250000 0.500000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 0.250000 0.500000 0.000000 0.250000 0.750000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 0.500000 0.500000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.250000 0.000000 0.750000 0.000000 -------------------------------------------------------------------------------- Time 5.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- YBR018C 6.38e-19 218_[+1(4.02e-11)]_129_[+3(2.11e-17)]_74 YBR019C 1.78e-63 79_[-3(1.15e-27)]_38_[+2(8.69e-32)]_31_[+1(1.93e-18)]_53_[-3(4.21e-05)]_122 YBR020W 3.19e-63 54_[+3(4.21e-05)]_53_[-1(1.93e-18)]_31_[-2(8.69e-32)]_38_[+3(1.15e-27)]_247 YLR081W 2.78e-37 81_[+1(9.38e-12)]_26_[-2(4.90e-21)]_32_[+3(1.79e-18)]_234 YML051W 1.84e-08 325_[+1(4.45e-13)]_146 YOR120W 1.62e-06 122_[-1(5.66e-11)]_349 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 3 reached. ******************************************************************************** CPU: unknown ******************************************************************************** LAM 7.0.6/MPI 2 C++/ROMIO - Indiana University